Ion. The W433 loop was only able to 548-04-9 chemical information oligomerize with the phenylalanine substitution, which is a conservative substitution. The loss of either the W433 loop insertion into the membrane or the loss of the R-group 3PO site resulted in no oligomer formation.The Effects of the Ply Loop Mutations on Ply OligomerizationPly oligomeric complexes are SDS resistant and can be detected by western blot as high molecular mass bands if the samples are not boiled prior to 
electrophoresis [47]. After each Ply variant was incubated in the presence of HCECs, oligomeric complexes were readily detectable by western blot for PlyWT, PlyA370G, PlyA406G, PlyA406E, PlyW433F and PlyL460G, but not PlyA370E, PlyW433G, PlyW433E, and PlyL460E (Figure 5). PlyWT and PlyA370G exhibited the darkest high molecular weight oligomer band in agreement with the fact that PlyA370G retained full lytic activity. PlyA406G, PlyA406E, PlyW433F, and PlyL460G all retained their ability toThe Effects of the Ply Loop Mutations on Lipid Raft ColocalizationWe performed sucrose density gradient centrifugations with solubilized HCECs incubated with both Ply and CTxbBiotinylated in order to separate the low density lipid rafts from the high density phospholipid bilayer (Figure 6). The sucrose gradients revealed that both PlyWT and CTxb did in fact localize to the low density lipid raft fractions at the top of the sucrose gradient (fractions 3-5). However, of the 9 mutants, only PlyA370G was found in the low density lipid raft fractions. The remaining mutants were only found in the high density fractions (fractions 9-12) and were unable to localize to the lipid raft fractions of the gradient.Pneumolysin Binds to Lipid Rafts of Corneal CellsDiscussionThe fact that 8 of the 9 mutant Ply variants exhibit a reduction in cytotoxicity when compared to PlyWT, but none of the mutants are deficient in HCEC surface binding indicates that the domain 4 loops are, in some capacity, involved in initiating oligomerization and/or the prepore to pore conversion. The sequence alignment of domain 4 Pfo and Ply shows nearly 75 sequence homology between the two molecules (Figure 1). The undecapeptide (W433) along with the L460 loop and the A370 loop are 100 conserved between Ply and Pfo, however, there is sequence variability when comparing the A406 loop. This lack of homology at the A406 loop may indicate that this loop is of less importance than the other more conserved loops in terms of contributing to the progression of the lytic mechanism. Additionally, substitution of glycine or glutamate at the A406 position has a smaller effect on cytotoxicity than those same mutations at any of the other loops, with the only exception being PlyA370G. The fact that PlyA370G resulted in no reduction in cytotoxicity, but PlyA370E did result in significant reduction in cytotoxicity indicates that the native alanine at position 370 is likely not involved in any direct molecular interactions with the membrane constituents, but rather simply supplies a stabilizing effect that still occurs when A370 is substituted with glycine. 10457188 Additionally, the fact that PlyA370E prevents oligomerization indicates that the A370 loop must interact with the membrane in order for oligomerization to occur. Ply and Pfo as a whole have been shown to be largely conserved in structure and amino acid sequence, so findings regarding one are likely to be at least partly applicable to another. However, we have discovered some behavioral differences between Ply an.Ion. The W433 loop was only able to oligomerize with the phenylalanine substitution, which is a conservative substitution. The loss of either the W433 loop 
insertion into the membrane or the loss of the R-group resulted in no oligomer formation.The Effects of the Ply Loop Mutations on Ply OligomerizationPly oligomeric complexes are SDS resistant and can be detected by western blot as high molecular mass bands if the samples are not boiled prior to electrophoresis [47]. After each Ply variant was incubated in the presence of HCECs, oligomeric complexes were readily detectable by western blot for PlyWT, PlyA370G, PlyA406G, PlyA406E, PlyW433F and PlyL460G, but not PlyA370E, PlyW433G, PlyW433E, and PlyL460E (Figure 5). PlyWT and PlyA370G exhibited the darkest high molecular weight oligomer band in agreement with the fact that PlyA370G retained full lytic activity. PlyA406G, PlyA406E, PlyW433F, and PlyL460G all retained their ability toThe Effects of the Ply Loop Mutations on Lipid Raft ColocalizationWe performed sucrose density gradient centrifugations with solubilized HCECs incubated with both Ply and CTxbBiotinylated in order to separate the low density lipid rafts from the high density phospholipid bilayer (Figure 6). The sucrose gradients revealed that both PlyWT and CTxb did in fact localize to the low density lipid raft fractions at the top of the sucrose gradient (fractions 3-5). However, of the 9 mutants, only PlyA370G was found in the low density lipid raft fractions. The remaining mutants were only found in the high density fractions (fractions 9-12) and were unable to localize to the lipid raft fractions of the gradient.Pneumolysin Binds to Lipid Rafts of Corneal CellsDiscussionThe fact that 8 of the 9 mutant Ply variants exhibit a reduction in cytotoxicity when compared to PlyWT, but none of the mutants are deficient in HCEC surface binding indicates that the domain 4 loops are, in some capacity, involved in initiating oligomerization and/or the prepore to pore conversion. The sequence alignment of domain 4 Pfo and Ply shows nearly 75 sequence homology between the two molecules (Figure 1). The undecapeptide (W433) along with the L460 loop and the A370 loop are 100 conserved between Ply and Pfo, however, there is sequence variability when comparing the A406 loop. This lack of homology at the A406 loop may indicate that this loop is of less importance than the other more conserved loops in terms of contributing to the progression of the lytic mechanism. Additionally, substitution of glycine or glutamate at the A406 position has a smaller effect on cytotoxicity than those same mutations at any of the other loops, with the only exception being PlyA370G. The fact that PlyA370G resulted in no reduction in cytotoxicity, but PlyA370E did result in significant reduction in cytotoxicity indicates that the native alanine at position 370 is likely not involved in any direct molecular interactions with the membrane constituents, but rather simply supplies a stabilizing effect that still occurs when A370 is substituted with glycine. 10457188 Additionally, the fact that PlyA370E prevents oligomerization indicates that the A370 loop must interact with the membrane in order for oligomerization to occur. Ply and Pfo as a whole have been shown to be largely conserved in structure and amino acid sequence, so findings regarding one are likely to be at least partly applicable to another. However, we have discovered some behavioral differences between Ply an.